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コース：Whole genome sequencing of bacterial genomes - tools and applications戻るには、こちら をクリックしてください。
- Welcome lecture
- General Principles of typing of bacteria
- Surveillance of Antimicrobial Resistance using whole genome sequencing
- Application of Genomic tools- One technology takes it all
- Introduction to Next-Generation sequencing (NGS)
- De novo assembly- from raw reads to contigs: assembler tool description and application
- Species identification: KmerFinder tool description and applications
- MLST Typing: MLST tool description and applications
- Resistance gene detection: Resfinder tool description and applications
- Salmonella Serotype identification: SeqSero tool description and applications
- E. coli serotype identification: serotype finder tool description and applications
- Plasmid replicon identification and plasmid typing
- Mobile Element Finder: A web-based tool for detection of Mobile Genetic Elements in assembled sequences
- Bacterial analysis pipeline- batch upload
- Phylogenetic relatedness: CSI Phylogeny tool description and applications
- Evergreen Tree: A platform for identification of foodborne bacterial outbreaks
- Multipurpose detection of genetic markers- My Db finder tool description and applications
- Tutorial
- Text with Link to files to be used in tutorial
- Final Remarks and perspectives