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Whole genome sequencing of bacterial genomes - tools and applications に戻る

デンマーク工科大学(Technical University of Denmark(DTU)) による Whole genome sequencing of bacterial genomes - tools and applications の受講者のレビューおよびフィードバック

4.6
886件の評価
241件のレビュー

コースについて

This course will cover the topic of Whole genome sequencing (WGS) of bacterial genomes which is becoming more and more relevant for the medical sector. WGS technology and applications are high on international political agenda, as the classical methods are being replaced by WGS technology and therefore bioinformatic tools are extremely important for allowing the people working in this sector to be able to analyze the data and obtain results that can be interpreted and used for different purposes. The course will give the learners a basis to understand and be acquainted with WGS applications in surveillance of bacteria including species identification, typing and characterization of antimicrobial resistance and virulence traits as well as plasmid characterization. It will also give the opportunity to learners to learn about online tools and what they can be used for through demonstrations on how to use some of these tools and exercises to be solved by learners with use of freely available WGS analysis tools . By the end of this course you should be able to: 1. Describe the general Principles in typing of Bacteria 2. Give examples of the applications of Whole Genome Sequencing to Surveillance of bacterial pathogens and antimicrobial resistance 3. Apply genomic tools for sub-typing and surveillance 4. Define the concept of Next-Generation Sequencing and describe the sequencing data from NGS 5. Describe how to do de novo assembly from raw reads to contigs 6. Enumerate the methods behind the tools for species identification, MLST typing and resistance gene detection 7. Apply the tools for species identification, MLST typing and resistance gene detection in real cases of other bacterial and pathogen genomes. 8. Describe the methods behind the tools for Salmonella and E.coli typing, plasmid replicon detection and plasmid typing 9. Utilize the tools for Salmonella and E.coli typing, plasmid replicon detection and plasmid typing in real cases of other bacterial and pathogen genomes. 10. Explain the concept and be able to use the integrated bacterial analysis pipeline for batch analysis and typing of genomic data 11. Demonstrate how to construct phylogenetic tree based on SNPs 12. Apply the phylogenetic tool to construct phylogenetic trees and explain the relatedness of bacterial or pathogen strains 13. Describe how to create your own sequence database 14. Utilize the MyDbFinder tool to detect genetic markers of interest from whole genome sequencing...

人気のレビュー

AP
2020年7月19日

Thank you very much for this course through which i learnt basic handling of bioinformatics tools and concepts of WGS. This will help me a lot while pursuing my PhD research work in my field.

MB
2019年6月9日

Excellent course with a wealth of information about tools and applications of whole genome sequencing. Presented in a very lucid and interesting manner, very crispy and simplified course.

フィルター:

Whole genome sequencing of bacterial genomes - tools and applications: 201 - 225 / 242 レビュー

by Matthew Y

2019年3月3日

Very much enjoyed the course and the practice problems involving Whole Genome Sequencing on the CGE website

by Bharti M

2021年1月20日

This was really a good course. I have learnt a lot from this course and able to apply to my datasets.

by Mokhtar M E

2020年5月28日

course is good i had learned really but it will be much better when create section after each session

by KAJAL N K

2020年8月17日

The instructor Shinny Ma'am did a wonderful job. it is one of the best courses I have done so far.

by Dyuti P

2020年5月23日

Thank you for the wonderful course. I can clearly say that I am now one step forward to my passion

by Deboleena D

2020年9月9日

It was a very nice experience learning through DTU. I want to thank all the professors very much.

by Asif H

2020年6月9日

The overall course material was good. But I faced a problem with the accent of the instructors.

by Prateek B

2020年9月9日

It was a nice learning experience. Thank you for this informative and interesting course.

by Sharavanakkumar S

2020年11月29日

I learned something new, which helps in identifying new tools used in bioinformatics.

by SHASHANK K S

2020年6月11日

Very useful course but it will be great if tools are explained in little more detail.

by Mahek B

2020年6月24日

the software suggested are slightly difficult to use rest the content is good

by Eddie S L L

2020年11月5日

I think this course is pretty good. It is very informational and practical.

by Mrithika S

2020年7月25日

This course was very useful and simple to learn and understand.

by ananya s

2019年11月7日

VERY THOROUGH AND INFORMATIVE. EAGER TO DO THE OTHER COURSES.

by Anushka G

2020年9月9日

The course was pretty interesting. I enjoyed learning it.

by Carla L I

2020年5月30日

It has very hard but very interesting for my career

by DINESH K R

2020年8月17日

It was really amazing lecture with detailed demo.

by AGBO A A J B P

2018年11月29日

perfect course . very instructive and well detail

by ESHA J

2020年10月16日

Thank you so much

This course was really helpful

by Yasser M

2018年5月5日

It is one of the best MOOC courses I have Taken.

by Rui P d S F M

2020年8月16日

The final task requires too much work.

by Ivonne G

2017年11月20日

I really like it. Easy and practical.

by Suman M

2020年10月31日

good but question are too trickly

by Abarna C

2020年9月9日

The course was interesting!