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Whole genome sequencing of bacterial genomes - tools and applications に戻る

デンマーク工科大学(Technical University of Denmark(DTU)) による Whole genome sequencing of bacterial genomes - tools and applications の受講者のレビューおよびフィードバック



This course will cover the topic of Whole genome sequencing (WGS) of bacterial genomes which is becoming more and more relevant for the medical sector. WGS technology and applications are high on international political agenda, as the classical methods are being replaced by WGS technology and therefore bioinformatic tools are extremely important for allowing the people working in this sector to be able to analyze the data and obtain results that can be interpreted and used for different purposes. The course will give the learners a basis to understand and be acquainted with WGS applications in surveillance of bacteria including species identification, typing and characterization of antimicrobial resistance and virulence traits as well as plasmid characterization. It will also give the opportunity to learners to learn about online tools and what they can be used for through demonstrations on how to use some of these tools and exercises to be solved by learners with use of freely available WGS analysis tools . By the end of this course you should be able to: 1. Describe the general Principles in typing of Bacteria 2. Give examples of the applications of Whole Genome Sequencing to Surveillance of bacterial pathogens and antimicrobial resistance 3. Apply genomic tools for sub-typing and surveillance 4. Define the concept of Next-Generation Sequencing and describe the sequencing data from NGS 5. Describe how to do de novo assembly from raw reads to contigs 6. Enumerate the methods behind the tools for species identification, MLST typing and resistance gene detection 7. Apply the tools for species identification, MLST typing and resistance gene detection in real cases of other bacterial and pathogen genomes. 8. Describe the methods behind the tools for Salmonella and E.coli typing, plasmid replicon detection and plasmid typing 9. Utilize the tools for Salmonella and E.coli typing, plasmid replicon detection and plasmid typing in real cases of other bacterial and pathogen genomes. 10. Explain the concept and be able to use the integrated bacterial analysis pipeline for batch analysis and typing of genomic data 11. Demonstrate how to construct phylogenetic tree based on SNPs 12. Apply the phylogenetic tool to construct phylogenetic trees and explain the relatedness of bacterial or pathogen strains 13. Describe how to create your own sequence database 14. Utilize the MyDbFinder tool to detect genetic markers of interest from whole genome sequencing...




Thank you very much for this course through which i learnt basic handling of bioinformatics tools and concepts of WGS. This will help me a lot while pursuing my PhD research work in my field.



Excellent course with a wealth of information about tools and applications of whole genome sequencing. Presented in a very lucid and interesting manner, very crispy and simplified course.


Whole genome sequencing of bacterial genomes - tools and applications: 101 - 125 / 319 レビュー

by Sarah A


one of the best courses ever i learned so many things in a short period. looking forward to your next course.


by Van m


This cause helps me to understand how to analyze the whole genome sequence of bacteria. It is an excellent cause.

by Chuang W


a little bit difficult. but there are many practical experience and practical question in the lecture and test

by PC


A short but fun course to learn about the various tools and applications available for whole genome sequencing.

by Viviane G


I have enjoyed the learning process during this course! Its very good for biological interested professionals.

by Sanam P


Enjoyed this course. Now, I do have much idea in WGS. Thank you all the instructors for designing this course.

by Pratik K


Extremely informative! and hands on training helps a lot. I can apply this knowlwdge in my work. Thank you.

by Carlos H C


A clear and very didactic course on the tools that DTU offers to analyze genomes. Thanks for the classes!



Very useful and helpful course to know how to interprete your results in different platforms and tools.

by Akampurira G


This is a great a way of learning a new skill, great tutors, great platform,flexible, this is amaizing

by devesh k


It was very informative and I have learnt to use the databases available for Whole Genome Sequencing.

by Nguyễn H T T


A very useful and practical course. Ms. Pimlapas Leekitcharoenphon's lectures are easy to understand.

by Parinda B


It was a great experience. I really enjoyed doing the course and hope tit will help me in the future

by Suprim T


Although I have 5 starred the course, a more practical approach could be incorporated in the course.

by Md. M A


Really excellent course. Must suggested for those who have interest in WGS(Whole Genome Sequencing)

by Kathya A O


Definitely gained a lot more than i expected! It was very helpful and I would really recommend it.

by Anushka J


the experience of learning this course was amazing. the faculties explained everything very well.



Great and very insightful course. It really shed light on many aspects on whole genome sequencing

by Josue D C C


Excelente curso, brinda una gran cantidad de herramientas muy útiles para realizar investigación.

by Asdren Z


Excellent. It helped me understand a lot of things related to Whole Genome Sequencing. Thank you

by Hamza A D


I like this course very much! The instructors were really helpful in getting their point across.

by Kerly R


Muchas gracias por su contenido valioso para realizar proyectos de investigación bioinformático

by Mohammed Y


This was an awesome exposure. I would like to learn more about metagenomics in the next course.

by Carlos A M V


A really great option to learn how to use web tools for genomic analysis. It is well explained